Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTHFVTDKCIKCKYTDCVEVCPVDCFYEGKNMLVINPDECIDCGVCIPECPVDAIVTDDSIKDILELDEELLSNEQKTFKSFYNINIEYSQKWPNITAKKQPLHTAEKYKEKKDKTAYFNENLE
1FD2 Chain:A ((4-104))
----VTDNCIKCKYTDCVEVAPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEVP--------------EDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHLER---
General information:
TITO was launched using:
RESULT:
Template:
1FD2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53542 for 756 contacts (-70.8/contact) +
2D Compatibility (PS) -10316 + (NN) -5520 + (LL) 1564
1D Compatibility (HY) -12000 + (ID) 2900
Total energy: -82714.0 ( -109.41 by residue)
QMean score : 0.498
(partial model without unconserved sides chains):
PDB file :
Tito_1FD2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FD2-query.scw
PDB file :
Tito_Scwrl_1FD2.pdb
: