Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLRLLCEIEYEV-RGMENIPKYPFVIASKHQSPLETFIFILLFRNAVFILKRELKWIPFIGLHLMALRMIFINRSDGINAMRHIIKLARMRIAENRSIIIF------PEGTRTAAKQKTKYQPGI-----AALYSVLSVPVLPVALNTGLFWPKSILSMRRNPGKAVIEILPPIYHGLNKNEFLKNLEKTIEERSNKLTAEKN
1O9W Chain:A ((1-176))
AVSFIGSTENDVGPSLGSYSRLPFVYDTRNK--------IGYQNANVWHISKGF----CVGLDGKV-DLPVVGSLDG----QSIYGLT-----EEVGLLIWMGDTKYSRGTAMSGNSWENVFSGWCVGANTASTQGLSVRVTPVILKRN----SARYSVQK---TSIGSIRMRPYNGSSAGS----VQTTVNFSLNPFTLND-
General information:
TITO was launched using:
RESULT:
Template:
1O9W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96731 for 1173 contacts (-82.5/contact) +
2D Compatibility (PS) -16109 + (NN) 6173 + (LL) 2468
1D Compatibility (HY) -10000 + (ID) 1650
Total energy: -115849.0 ( -98.76 by residue)
QMean score : 0.244
(partial model without unconserved sides chains):
PDB file :
Tito_1O9W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1O9W-query.scw
PDB file :
Tito_Scwrl_1O9W.pdb
: