Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKIIYCITKADNGGAQTHLIQLANHFC-VHHDVYVIVGNHGPMIEQLDARVNVIILEHLVGPIDFKQDILAVKVLAQLFSKIKP-------DVIHLHSSKAGTVGRIAKFISKSKDTRVVFTAHGWAFTEGVKPAKKFLYLVIEKLMSCITDSII---CVSDFDKQLALKYRFNRL--KLTTIHNGIADVPAVKQTLKSQSHNNIGEVVGMLPNKQDLQINAPTKHQFVMIARFAYPKLPQNLIAAIEILKLHNSNHAHFTFIGDGPTLNDCQQQVVQAG-LENDVTFLGNVINASHLLSQYDTFILISKH---EGLPISIIEAMATGLPVIASHVGGISELVADNGICMM------NNQPETIAKVLEKYLIDSDYIKMSNQSRKRYLECFTEEKMIKEVEDVYNGKSTQ |
| 4NC9 Chain:A ((19-367)) | ------------GGVQSHVLQLAEVLRDAGHEVSVLA-PASPHVKLPD----YVVSGGKAV--------ARLRFGPATHRKVKKWIAEGDFDVLHIHEPNAPSLSMLAL---QAAEGPIVATFH-------TSTTKSLTLSVFQGILRPYHEKIIGRIAVSD----LARRWQMEALGSDAVEIPNGV-DVASFADAPLLDGYPREGRTVLFLG-----RYDEPRKGMAVLLA--ALPKLVARF-PDVEIL-----------IVGRG----DEDELREQAGDLAGHLRFLGQVDDATKASAMRSADVYCAPHLGGESFGIVLVEAMAAGTAVVASDLDAFRRVLADGDAGRLVPVDDADGMAAALIGILEDDQLRAGYVARASERVHRYDWSVVSAQIMRVYETV------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NC9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -152017 for 2449 contacts (-62.1/contact) +
2D Compatibility (PS) -34336 + (NN) -9135 + (LL) 3896
1D Compatibility (HY) -17600 + (ID) 4200
Total energy: -213392.0 ( -87.13 by residue)
QMean score : 0.362
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