Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLI--LIVIGLIFTALGIA-GAVLPLLPTTPFLLVAVFCFARSSDRFYNWLINQKIYKEYVENFYLHRGYTLQQKIKILISLYI---VIGFSIYMV---DVLAVRV-----GLIIMVIIQ------TAVLFTFVK-TLPKSNHKIEE
2Y9W Chain:C ((9-150))
LDLPGTRILNGANWANNSATSGTLIIFDQSTP---------GQDADR---WLIHNYLDGYKIFNMGSNNWASVSRGNTVLGVSEFDGQTCKWSIEYSGNGEEFWIRVPREGGGGAVWTIKPASSQGPTTVFLDLLKETDPNQRIKFAV
General information:
TITO was launched using:
RESULT:
Template:
2Y9W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116693 for 833 contacts (-140.1/contact) +
2D Compatibility (PS) -11867 + (NN) 5311 + (LL) 1476
1D Compatibility (HY) -3200 + (ID) 1250
Total energy: -126223.0 ( -151.53 by residue)
QMean score : 0.045
(partial model without unconserved sides chains):
PDB file :
Tito_2Y9W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Y9W-query.scw
PDB file :
Tito_Scwrl_2Y9W.pdb
: