Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAIAVLLNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSSASDLKAQFYRGTLQRF------YQSLHAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILHQRSLFNEARIAVTLIRGNHYFKASKTMN-QQGEP---YKVFTSFYRKWRPYLRHRDVYHYDLKSF----------EDFVIASPDDLVFDDIAFGSS-----QVIEQNKWQHFLDQD--IQNYESGRDYLPEVLTSQ--LSVALAYGLLDIIEIF---NDLLARYDEDEANHEAFIRELIFREFYYVLMTQYPETSYQAFKPKYRQIKWSQNEANFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK-DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKALYIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIEL-GSHYPRQMVDHQEKRTQVLATFKALD |
4K0R Chain:A ((11-475)) | --------KGLRLHDNPALKECIQGADTIRCVYILDP---------VGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAI--KKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLVSKMEPLEMP-----------CMTPLSDDHDEKYGVPSLEELGFDT--LSSAVWPGGETEALTRLERHLERKAWVANFERPR----SLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAE------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4K0R.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -169503 for 3145 contacts (-53.9/contact) +
2D Compatibility (PS) -42217 + (NN) -9268 + (LL) 4076
1D Compatibility (HY) -26400 + (ID) 5800
Total energy: -249112.0 ( -79.21 by residue)
QMean score : 0.398
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