Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLNEIQILNNGYPMPSVGLGVYKISDEDMTKVVNAAIDAGYRAFDTAYFYDNEASLGRALK---DNG-VDREDLFITTKLWNDYQGYEKTFEYFNKSIENLQTDYLDLFLIHWPCEADGLFLETYKAMEELYEQGKVKAIGVCNFNVHHLEKLMAQSSIKPMVNQIEVHPYFNQQELQEFCDRHDIKVTAWMPLMRNR-GLLDNPVIVKIAEKYHKTPAQVVLRWHLAHNRIIIPKSQTPKRIQENIDILDFNLELTEVAEIDALDRNAR---QGKNPDDVKIGDLK
1VP5 Chain:A ((20-291))
-------LNNGVEMPILGYGVFQIPPEKTEECVYEAIKVGYRLIDTAASYMNEEGVGRAIKRAIDEGIVRREELFVTTKLWVSDVGYESTKKAFEKSLKKLQLEYIDLYLIHQPF---GDVHCAWKAMEEMYKDGLVRAIGVSNFYPDRLMDLMVHHEIVPAVNQIEIHPFYQRQEEIEFMRNYNIQPEAWGPFAEGRKNIFQNGVLRSIAEKYGKTVAQVILRWLTQKGIVAIPKTVRRERMKENISIFDFELTQEDMEKIATLDEGQSAFFSHRDPEVVK-----
General information:
TITO was launched using:
RESULT:
Template:
1VP5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -151950 for 2236 contacts (-68.0/contact) +
2D Compatibility (PS) -29014 + (NN) -15981 + (LL) 1304
1D Compatibility (HY) -23200 + (ID) 6150
Total energy: -224991.0 ( -100.62 by residue)
QMean score : 0.597
(partial model without unconserved sides chains):
PDB file :
Tito_1VP5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VP5-query.scw
PDB file :
Tito_Scwrl_1VP5.pdb
: