Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRMKRFLTIVQILLVVIIIIFGYKIVQTYIEDKQERANYEKLQQKFQMLMSKHQEHVRPQFESLEKINKDIVGWIKLSGTSLNYPVLQGKTNHDYLNLDFEREHRRKGSIFMDFRNELKNLNHNTILYGHHVGDNTMFDVLEDYLKQSFYEKHKIIEFDNKYGKYQLQVFSAYKTTTKDNYIRTDFENDQDYQQFLDETKRKSVINSDVNVTVKDKIMTLSTCEDAYSETTKRIVVVAKIIKVS
4UX7 Chain:B ((66-242))
-------------------------------------------------------------EDLSKINSDFKFWLSVENTNINYPVVQSKDNSYYLDKDFYKKDSISGTLFMDYRNKSID-DKNIIIYGHNMKNKTMFNNLNKFKDADFFKKNNKIKITLNGKEFLYDVFSAYIVESDYDYLKTNFNNESDYQNYINDITSKSLYKSPIKVNSNDKIVTLSTA--TYEFDDARMVIHGRLI---
General information:
TITO was launched using:
RESULT:
Template:
4UX7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79259 for 1356 contacts (-58.5/contact) +
2D Compatibility (PS) -18606 + (NN) -2359 + (LL) 7540
1D Compatibility (HY) -17200 + (ID) 3200
Total energy: -113084.0 ( -83.40 by residue)
QMean score : 0.632
(partial model without unconserved sides chains):
PDB file :
Tito_4UX7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4UX7-query.scw
PDB file :
Tito_Scwrl_4UX7.pdb
: