Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSFFKRLKDKFATNKENEEVKSLREEQGQDKLEDTHSEGSTQDVNDLAENAEVKKKPRKLSEADFDDDGLISIEDFEEIEAQKMGAKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEAQRRNIQDTEDLREVIVEKIVEIYHQEDD--------NSEAMNIEDGRLNVILMVGVNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAAKNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQARNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESYVYGLFADMIEQNDEITTVENDQIVTEEKDDNHGAK |
2IYL Chain:D ((23-284)) | --------------------------------------------------------------------------------------------------------------------------------DVGLSATEEILQEVRASGRK-------DLKEAVKEKLVGMLEPD--ATLRKLGFNPQK--PVEPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT------TQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ--LEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPEAFVEALLED---------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2IYL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -152666 for 1950 contacts (-78.3/contact) +
2D Compatibility (PS) -26096 + (NN) -13304 + (LL) 11868
1D Compatibility (HY) -21600 + (ID) 6150
Total energy: -207948.0 ( -106.64 by residue)
QMean score : 0.677
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