Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMRKLVVGSRRSKLALTQSQQFINKLKAVEPNLEIEIKEIVTKGDRIVDKQLSKVGGKGLFVKEIQHELFEKNIDMAIHSLKDVPSVIPEGLTLGCIPDRELPFDAYISKTHTPLSQLPEGSIIGTSSLRRGAQILSKYPNLEIKWIRGNIDTRLEKLQTEDYDAIILAAAGLRRMGWSDDIVTSYLDRDTLLPAIGQGALGIECRSDDEELLTLLSKVHNDEVAKCVTAERTFLAEMDGSCQVPIAGYATISDQKEIEFTGLIMTPDGKERFEYT--MNGTDPVELGKTVSNKLKEQGAYEIIKRLNEQH
1GTK Chain:A ((3-309))DNVLRIATRQSPLALWQAHYVKDKLMASHPGLVVELVPMV-----------------GLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRRQCQLAERRPDLIIRSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGLESRI-RAALPPEISLPAVGQGAVGIECRLDDSRTRELLAALNHHETALRVTAERAMNTRLEGGCQVPIGSYAELID-GEIWLRALVGAPDGSQIIRGERRGAPQDAEQMGISLAEELLNNGAREILAEVYNG-


General information:
TITO was launched using:
RESULT:

Template: 1GTK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111545 for 2434 contacts (-45.8/contact) +
2D Compatibility (PS) -31777 + (NN) -23797 + (LL) 952
1D Compatibility (HY) -20400 + (ID) 6250
Total energy: -192817.0 ( -79.22 by residue)
QMean score : 0.572

(partial model without unconserved sides chains):
PDB file : Tito_1GTK.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1GTK-query.scw
PDB file : Tito_Scwrl_1GTK.pdb: