Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MPELPEVEHVKRGIEPYVINQKIEHV-IFSDKVIEGKAQGKETIIKGIELDTFKTLSEGYTITNVERRSKYIVFQLDNKREQRTLISHLGMAGGFFIVDELEDIMIPNYRKHWHVIFELSNDKKLIYSDIRRFGEIRNVAS--VASYPSFLEIAPEPFTNEALTYYLNRIHQQSNKNKPIKQVILDHKVIAGCGNIYACEALFRAGVLPDKKVKDLTHQQQEMVFYYVREVLEEGIKHGGTSISDYRHADGKTGEMQLHLNVYKQP--VCKVCGSQIETKIIATRNSHYCPVCQK |
3GQ4 Chain:A ((1-273)) | -PQLPEVETIRRTLLPLIVGKTIEDVRIFWPNIIRHPRDS----------EAFAARMIGQTVRGLERRGKFLKFLLDRD----ALISHLRMEGRYAVASALEPL-----EPHTHVVFCFTDGSELRYRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRS--VKALLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVMKGGSTVRTYVNTQGEAGTFQHHLYVYGRQGNPCKRCGTPIEKTVVAGRGTHYCPRCQR |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GQ4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -119597 for 2239 contacts (-53.4/contact) +
2D Compatibility (PS) -28240 + (NN) -7968 + (LL) 1844
1D Compatibility (HY) -20400 + (ID) 4750
Total energy: -179111.0 ( -80.00 by residue)
QMean score : 0.397
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