Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----------------------MSKDKDPKLNYHEEENSMVTDFEDLKELGKEMEQISDQNDQEKNSEEDSQ-------------
1HDM Chain:B ((3-87))
FVAHVESTCLLDDAGTPKDFTYCISFNKDLLTCWDPEENKMAPCNSLANVLSQHLNQ-KDTLMQRLNGLQNCATHTQPFWGSLTNR
General information:
TITO was launched using:
RESULT:
Template:
1HDM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 21392 for 273 contacts (78.4/contact) +
2D Compatibility (PS) -5394 + (NN) -1878 + (LL) 204
1D Compatibility (HY) -400 + (ID) 600
Total energy: 13324.0 ( 48.81 by residue)
QMean score : 0.371
(partial model without unconserved sides chains):
PDB file :
Tito_1HDM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HDM-query.scw
PDB file :
Tito_Scwrl_1HDM.pdb
: