Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKFFFIGLLVFVVFFTAATIIWFSYDKNKYGTKQYDKTFKDDAFDNVSINLDSTELRIKRGNQFRVKYDGDNDILINIVDKTLKISDKRSKTRGYAIDMNPFHENKKTLTIEMPDKMIKRLNLSSGAGSVRISDVDLENTSIQSINGEVVIKNSNLDALDSKTNNSSTYISKSNIKNSNIKVVIGTLQIDKSQIKQSIFLNDHGDIEFK---NMPSKVDAKASTKQGDIRFKYDSKPEDTILKLNPGTGDSVVKNKTFTNGKVGKSDNVLEFYTIDGNIKVE |
3V85 Chain:A ((1-210)) | MEVEVKLRLLTAAAHLRLTTLL--------TPYHLKTLHQRNTFFDTPKNDLSL------RRAVLRLRFLQNSP-----SPPRCIVSLKAKPTLANG-------ISRVEEDEEEIEYWIGKECVESPAKLSD-----IGSRVLKRVKEEY----------GFNDFLGFVCLGGFENVRNVYEWRGVKLEVDETKYDF----GNCYEIECETEEPERVKTMIEEFLTEEKIEFSNSDMT----------------KFAVFRSGKLP------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3V85.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 85435 for 1550 contacts (55.1/contact) +
2D Compatibility (PS) -20286 + (NN) 2713 + (LL) 4952
1D Compatibility (HY) -4000 + (ID) 1400
Total energy: 67414.0 ( 43.49 by residue)
QMean score : -0.032
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