Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------MNTLVNMFFDFIIKLAKAIGIV-GGVNACSSLFDEPKVPAELTNLYDK---
1SKV Chain:A ((2-65))
SKEVLEKELFEMLDEDVRELLSLIHEIKIDRITG-NMDKQKLGKAYFQVQKIEAELYQLIKVSHH
General information:
TITO was launched using:
RESULT:
Template:
1SKV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19582 for 230 contacts (-85.1/contact) +
2D Compatibility (PS) -4614 + (NN) -370 + (LL) 204
1D Compatibility (HY) 2400 + (ID) 50
Total energy: -22012.0 ( -95.70 by residue)
QMean score : 0.504
(partial model without unconserved sides chains):
PDB file :
Tito_1SKV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SKV-query.scw
PDB file :
Tito_Scwrl_1SKV.pdb
: