Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRRGDVYLADLSPVQGSEQGGVRPVVIIQNDTGNKYSPTVIVAAITGRINK-AKIPTHVEIEKKKYKLDKDSVILLEQIRTLDK-KRLKEKLTYLSDDKMKEVDNALMISLGLNAVAHQKN
1M1F Chain:A ((1-110))
-MERGEIWLVSLDPTAGHEQQGTRPVLIVTPAAFNRVTRLPVVVPVTS---FARTAGFAVSLD--GVGIRTTGVVRCDQPRTIDMKARGGKRLERVPETIMNEVLGRLSTILT---------
General information:
TITO was launched using:
RESULT:
Template:
1M1F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45932 for 745 contacts (-61.7/contact) +
2D Compatibility (PS) -11170 + (NN) -929 + (LL) 1284
1D Compatibility (HY) -6800 + (ID) 1450
Total energy: -64997.0 ( -87.24 by residue)
QMean score : 0.368
(partial model without unconserved sides chains):
PDB file :
Tito_1M1F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M1F-query.scw
PDB file :
Tito_Scwrl_1M1F.pdb
: