Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNY-------SSRQQPDKHWL--RKVDWVLVATIAVLAIFSVLLINSA-MGGGQYSANFGIRQIFYYILGAIFA----GIIMFISPKKIK-HYTYLLYFLICLLLIGLLVIPESPITPIINGAKSWYTFGPISIQPSEFMKIILILAL-ARVVSRHNQFTFNKSFQSDLLLFFKIIGVSLV----------------------P-SILILLQNDLGTTLVLAAIIAGVMLVSGITWRILAPIFITGIV-----------GAMTVILGILYAPALIENLLGVQLYQMGRINSWLDPYTYS-SGD-GY----HLTESLKAIGSGQLLGKGY-NHGEVYIPENHTDFIFSVIGEELGF-IGSVILILIFLFLIFHLIRLAAKIEDQFNKIFIVGFVTLLVFHILQNIGMTIQLLPITGIPLPFISYGGSALWSMMTGIGIVLSIYYHEPKRYVDLYHPKSN |
| 4C8H Chain:A ((25-476)) | FRYMPFSPAGTPFGFTDRRYLTMNEVGYVSTVKNSEQYSITVSFFDVGRFREYHFEDLFGYDLCFLNEKGTLFGQSKTGQIQYRPHDSIHSNWTKIIPLQAGERITSVAATPVRVIVGTSLGYFRSFNQFGVPFAVEKTSPIVALTAQNYRVFSVHYSQFHGLSYSLSELKRYYKRECPLPMSLPNINSDMKKDANLDYYNFNPMGIKSLFFSSYGDPCIFGSDNTLLLLSK---WRSPEESKWLPILDSNMEIWKMSGGKETTDIHVWPLALAYDTLNCILVKGKHIWPEFPLPLPSEMEIRMPVFVKSKLLEENKAILNKEIQIPVSMAAEEEYLRSKVLSELLTDTLENDGEMYG-------------NENEVLAALNGAYDKALLRLFASACSD---QNVEKALSLAHELKQDRALTAAVKISERAEL--PSLVKKINNIREARYEQQ------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4C8H.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -309586 for 2762 contacts (-112.1/contact) +
2D Compatibility (PS) -37972 + (NN) 11588 + (LL) 2420
1D Compatibility (HY) 400 + (ID) 2950
Total energy: -336100.0 ( -121.69 by residue)
QMean score : 0.134
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