Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTFKAVRFQIVNEHGRIIEYELEDGVIINKEESGTGWLLEIVISNEHYETFKEYQDNEQLLDIRVVITRPANDPALFESTVKSIKNFK---TTMSIVFECHIYTLRQQYAESLLEQLIDDGLSGEELKKSFNRMMQSKPKLKDEKLEE
2NLV Chain:A ((27-99))
-----------------------------------------------------------QDVEVQLILDTERNHYQWMNVGWQGLNRIYRCVIHFDIK-DGKIWLQQNLTDRNPAEELVMMGVPREDIVLGLQ----------------
General information:
TITO was launched using:
RESULT:
Template:
2NLV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14646 for 383 contacts (-38.2/contact) +
2D Compatibility (PS) -7231 + (NN) 622 + (LL) 6216
1D Compatibility (HY) -4800 + (ID) 400
Total energy: -20239.0 ( -52.84 by residue)
QMean score : 0.239
(partial model without unconserved sides chains):
PDB file :
Tito_2NLV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NLV-query.scw
PDB file :
Tito_Scwrl_2NLV.pdb
: