Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MQFLDFLIALL-----PALFWGSVVLIN---------VFVGGGP-YNQIRGTTL---GALIVGLGLLITG-FAKFNNPTVIIVGLISGALW--------AFGQANQLKSI--SLIGVSNTMPVSTGMQLVGTTLFSVIFLGEW-SSMTQIIFGLIAMILLVTG------------------VALTSLKAKNERQS-----DNPEFKKAMGILIVS-TVGYVGFVVLGD------IFGVGGTD-----------ALFFQSVGMAI-----GGFILSMNHKTSLKSTALNLLPGVIWGIGNLFMFYSQPKVGVATSFSLSQLLVIVSTLGG--------IFILGERKDRRQMTGIWAGIIIIVIAAIILGNLK |
4OJV Chain:A ((1-369)) | --MVVFEITILGANGGPTEYGTQCFILKPARTEDPELIAVDGGAGMYQLREMLVQGDDELVPSFYEHDREPIEFFIDSKLNIQKGLSKSLLQSLKRQGEHFESANTMKKTYEVFQGITDYYITHPHLDHISGLVVNSPSIYEQENSKKKTIWGLPHTIDVLQKHVFNDLIWPDLTAERSRKLKLKCLNPKEVQKCTIFPWDVIPFKVHHGIGVKTGAPVYSTFYIFRDRKSKDCIIVCGDVEQDRRESEESLLEEFWSYVAENIPLVHLKGILVECSCPLSSKPEQLYGHLSPIYLINELSNLNTLYN----SSKGLSGLNVIVTHVKSTPAKRDPRLTILEELRFLAEERNLGDLRISIALEGHTLFL-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4OJV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -250572 for 2182 contacts (-114.8/contact) +
2D Compatibility (PS) -29303 + (NN) 5557 + (LL) 924
1D Compatibility (HY) -14400 + (ID) 3050
Total energy: -290844.0 ( -133.29 by residue)
QMean score : 0.063
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