Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLENQLAELKYDYVRLQGDLEKRESLNLDTSALVRQLKDIENEIRNVRAQMQD
3NMD Chain:A ((21-64))
------LRDLQYALQEKIEELRQRD---ALIDELELELDQKDELIQMLQNELD-
General information:
TITO was launched using:
RESULT:
Template:
3NMD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 4307 for 166 contacts (25.9/contact) +
2D Compatibility (PS) -4849 + (NN) -2621 + (LL) 492
1D Compatibility (HY) -2000 + (ID) 400
Total energy: -5071.0 ( -30.55 by residue)
QMean score : 0.473
(partial model without unconserved sides chains):
PDB file :
Tito_3NMD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NMD-query.scw
PDB file :
Tito_Scwrl_3NMD.pdb
: