Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKKLLTLFIVSMLILTACGKKESATTSSKNGKPLVVIYGDYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVNLAFLGKDSIVGSRASHAVLMYAPKSFLDFQKQLFAAQQDENKEWLTKELLDKHI-KQLHLDKETENKIIKDYKTKDSKSWKAAEKDKKIAKDNHIKTTPTAFINGEKVEDPYDYESYEK---LLKDKIK
3DVW Chain:A ((45-207))
-------------------------------GKVEVLEFFGYFCPHCAHL-EPVLSKHAKSFKDDMYLRTEHV---VWQKEMLTLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKLQNPEVLKKWLGEQTAFDGK---KVLAAYESPESQA--RADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVR
General information:
TITO was launched using:
RESULT:
Template:
3DVW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18689 for 1223 contacts (-15.3/contact) +
2D Compatibility (PS) -17453 + (NN) -9652 + (LL) 3152
1D Compatibility (HY) -6800 + (ID) 2250
Total energy: -51692.0 ( -42.27 by residue)
QMean score : 0.507
(partial model without unconserved sides chains):
PDB file :
Tito_3DVW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DVW-query.scw
PDB file :
Tito_Scwrl_3DVW.pdb
: