Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIILSASVKNLREI---------SVKE--KFLWLNAKSYLISVFA------PFILL------PWIDLLSAFLLYLGFL-------ALFSVLEFFDEDIADIIIAKSKIKTKTKCYRA-
4JOI Chain:C ((1-118))
MLPKPGTYYLPWEVSAGQVPDGSTLRTFGRLCLYDMIQSRVTLMAQHGSDQHQVLVCTKLVEPFHAQVGSLYIVLGELQHQQDRGSVVKARVLTCVEGMNLPLLEQAIREQRLYKQER
General information:
TITO was launched using:
RESULT:
Template:
4JOI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61628 for 531 contacts (-116.1/contact) +
2D Compatibility (PS) -8919 + (NN) 5633 + (LL) 0
1D Compatibility (HY) -6000 + (ID) 450
Total energy: -71364.0 ( -134.40 by residue)
QMean score : 0.163
(partial model without unconserved sides chains):
PDB file :
Tito_4JOI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JOI-query.scw
PDB file :
Tito_Scwrl_4JOI.pdb
: