Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNTYAQESKLRLKTKIGADGRCVIEDNFFTPPFKLMAPFYPKDDLAEIMLLAVSPGLMKGDAQDMQLNIGPNCKLRITSQSFEKIHNTEDGFASRDMHIVVGENAFLDFAPFPLIPFENAHFKGNTTISLRSSSQLLYSEIIVAGRVARNELFKFNRLHTKISILQDEKPIYYDNTILDPKTTNMNNMCMFDGYTHYLNLVLVNCPIELSGARELIEESEGVDGAVSKIASSHLCLKALAKGSEPLLHLREKIARLVTQTTTQKV
1RKC Chain:B ((1944-1969))
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YTKKELIESARKVSEKVSHVLAALQA------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1RKC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1411 for 97 contacts (14.5/contact) +
2D Compatibility (PS) -2720 + (NN) -36 + (LL) 16244
1D Compatibility (HY) -1200 + (ID) 350
Total energy: 13349.0 ( 137.62 by residue)
QMean score : 0.225
(partial model without unconserved sides chains):
PDB file :
Tito_1RKC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RKC-query.scw
PDB file :
Tito_Scwrl_1RKC.pdb
: