Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLNMNTHTRGIDSGLIHSLQSISLSMFRKGFFGLYQGSISARIGA-NQFVINKRNAVFDQLNENTLLVLHDK-ID-YR-WKEASLDSPIHASVYREFLDAKFIAYARPPYSLAYSLRHNRLLPR-DYLGYRSLGEEIAIFNPKD----YDSWQERADTEILRQLQES-----KKYFVFIKGCGIFAYHRELSKLMEVFDLIENSCKVLRLGDLMDYCYNDDPRLSV
1K0W Chain:A ((2-206))
-----------LEDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSIMTADDMVVVSIETGEVVEGAKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQAGQSIPATGTTHANYFYG-TIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQTLL
General information:
TITO was launched using:
RESULT:
Template:
1K0W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123611 for 1606 contacts (-77.0/contact) +
2D Compatibility (PS) -20138 + (NN) -2645 + (LL) 816
1D Compatibility (HY) -2800 + (ID) 1300
Total energy: -149678.0 ( -93.20 by residue)
QMean score : 0.390
(partial model without unconserved sides chains):
PDB file :
Tito_1K0W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1K0W-query.scw
PDB file :
Tito_Scwrl_1K0W.pdb
: