Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAQEKAVIRDPKK--LNAFDLRWIASLFGTAVGAGILFLPIRAGGHGIWAI---VVMSAIIFPLTYL-GHRALAYFIGSKDKEDITMV------VRSHFGAQWGFLITLLYFLAI---YPICLAYGVGITNVFDHFFTNQLHLAPFHRGLLAVALVSLMMLVMVFNATIVTRICNALVYPLCLILLLFSLYLIPYWQGANLFVVPSFKEFVLAIWLTLPVLVFSFNHSPIISTFTQNVGKEYGAFKEYK---LNQIELGTSLMLLGFVMFFVFSCV--MCLNADDFVKAREQNIPILSYFANTLNNPLINYAGPVVAFLAIFSSFFGHYYGAKEGLEGIIIQSLKLKQASKTLSVGVTIFLWLTITLVAYINPNILDFIENLGGPIIALILFVMPMIAFYSVSSLKR-FRNFKVDIFVFVFGSLTALSVFLGLF |
| 3PV2 Chain:A ((6-439)) | MPSMAPVLKNIMPAIVNVAVQGYLPNRKFESIGSGVIIDP----NNGVIITNDHVIRNASLITVTLQDGRRLKARLIGGDSETDLAVLKIDAKNLKSLVIGDSDKLEVGDFVVAIGNPFGLSQSATFGIVSALKNFIQTD---AAINPGNSGGALVNAKGELIGINTAILVGIGFAIPINMVKDVAQQIIKFGSIHRGLMGIFVQHL---------------------------TPELAQAMGYPEDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIVERD--NKPLTLSAVVTDIKSHEQKLQSNNPFLYGLALRAFEQESPPHGNVIGVQVVGASENSAGWRAGIRPGDIIISANKKPVT------------DVKSLQTIAQEKKKELLVQVLRGPGSMYLLVI-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PV2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -382506 for 2801 contacts (-136.6/contact) +
2D Compatibility (PS) -37723 + (NN) 6778 + (LL) 5680
1D Compatibility (HY) -8400 + (ID) 2850
Total energy: -419021.0 ( -149.60 by residue)
QMean score : 0.134
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