Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFLNGLAGNLLIVVILLCVVVFFALKAIHIQKEQATNYYRYKDINALEAKNTQNHANYELVNQGSKK
1OQW Chain:A ((9-24))
-------------VVAIIGILAAIAIPQYQNYVARSEGASALASVNPLKTTVEEALSRGWSVKSGTGT
General information:
TITO was launched using:
RESULT:
Template:
1OQW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9241 for 55 contacts (-168.0/contact) +
2D Compatibility (PS) -1578 + (NN) -1237 + (LL) 952
1D Compatibility (HY) -2000 + (ID) 150
Total energy: -13254.0 ( -240.98 by residue)
QMean score : 0.556
(partial model without unconserved sides chains):
PDB file :
Tito_1OQW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OQW-query.scw
PDB file :
Tito_Scwrl_1OQW.pdb
: