Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKEKNFWPLGIMSVLIFGLGIVVFLVVFALKNSPKNDLVYFKGHNEVDLNFNAMLKTYENFKSNYRFSVGLKPLTESPKTPILPYFSKGTHGDKKIQENLLNNALILEKSNTLYAQLQPLKPALDSPNIQVYLAFYPSQSQPRLLGTLDCKNACEPLKFDLLEGDKVGRYKILFKFVFKNKEELILEQLAFFK
3MK7 Chain:C ((3-31))
----TFWSGYIALLTLGTIVALFWLIFATRKGESAGTTDQTMGHAFDGIEEYDNPLPRWWFLLFIGTLVFGILYLVLYPGLGNWKGVLPGYEGGWTQEKQWEREVAQADEKYGPIFAKYAAMSVEEVAQDPQAVKMGARLFANYCSICHGSDAKGSLGFPNLADQDWRWGGDAASIKTSILNGRIAAMPAWGQ
General information:
TITO was launched using:
RESULT:
Template:
3MK7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11742 for 108 contacts (-108.7/contact) +
2D Compatibility (PS) -2898 + (NN) -1349 + (LL) 440
1D Compatibility (HY) -2000 + (ID) 250
Total energy: -17799.0 ( -164.81 by residue)
QMean score : 0.060
(partial model without unconserved sides chains):
PDB file :
Tito_3MK7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MK7-query.scw
PDB file :
Tito_Scwrl_3MK7.pdb
: