Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MFRKLATSVSLISLLISNALYAKEISEADKVIKATKETKETKKEAKRLKKEAKQRQQIPDNKKPQYVSVDDTKTQALFDIYDTLNVNDKSFGDWFGNSALKNKTYLYAMDLLDYNNYLSIENPIIKTRAMGTYADLIIITGSLEQVNGYYNILKALNKRNAKFVLKINDKIPYAQATFLRVPKRSDPNAHTLDKGASIDESKLFEQQKKMYFNYANDVICRPNDEVCSPLRDEMVAMPTNDSVTQKPNIIAPYSLYRLKETNNANEAQPSPYATQTAPENSKEKLIEELIANSQLIANE------------EEREKKLLAEKEKQETELAKYKLKDLENQKKLKALEAELKKKNTKKPRVVEVPIPPKTSDSDETMRVIKEKENYNGLLVDKETTIKRSYKGTLISENSYSKKTPINLEDLRSLEEEIKSYYVKSNGLCYANGINLYVKIKNDPYKEGMLCGYESVQKLLSPLRDKLKYDKQKLQKALLKDLK |
4APJ Chain:A ((5-109)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EAEASKFVEEYDRTSQVVWNEYAEANWNYNTNITTETSKILLQKNMQ---IANHTLKYGTQARKFDVNQLQ----NTTIKRIIK-----KVQDLERAALPAQELEEYNKILLDMETTYSVATVCHPNGSCLQLEPDLTNVMATSRKYEDLLWAWEGWRDKAGRAILQFYPKYVELINQAARLNGYVDAGDSWRSMYETPSLEQDLERLFQELQPL |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4APJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 46587 for 537 contacts (86.8/contact) +
2D Compatibility (PS) -10118 + (NN) -6171 + (LL) 18760
1D Compatibility (HY) -3600 + (ID) 1500
Total energy: 43958.0 ( 81.86 by residue)
QMean score : 0.377
|
|
|