Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGIIYLILFLIVIYLLYRILDVLEQK
1K8K Chain:E ((68-75))
--LIYITLYISECLKKLQKCNSKSQG
General information:
TITO was launched using:
RESULT:
Template:
1K8K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4220 for 22 contacts (-191.8/contact) +
2D Compatibility (PS) -579 + (NN) 2296 + (LL) 36
1D Compatibility (HY) -2400 + (ID) 150
Total energy: -5017.0 ( -228.05 by residue)
QMean score : 1.333
(partial model without unconserved sides chains):
PDB file :
Tito_1K8K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1K8K-query.scw
PDB file :
Tito_Scwrl_1K8K.pdb
: