Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRFFILFFMGMLGVGFSQTELDLKDLEKKPAGIVRDYYLWRYISDKKTSLENAKKAYELTQNKNSALQKAMQEKGVENSDKSPDAKMPEDIYCKQITLESMLETTDAFQASCIAIALKSKIRDFDKIPIQTFKPLQEKIKEAYPILYEELEILQSKNVSASLFKANAQVFSALFNHLSYEKKLQIFEKHIPIKELNRLLDEDYPAFNRLIYQVILDPKLDHFKDALAKSNATQSNAQTFFILGINEILHKKTSKALKYFERSEAVVKDDDFSKDRAIFWQYLASKKKKTLEHLSQSPALNLYSLYASRKLKTTPSYRIISHIQNLSQENPPFNTYDPFSWQIFKEKTLSLKDEGAFNAMLKSLYYEKSAPELTYLLSQRNKDKIYYYLSPYEGIIEWQNTDERAMAYAIARQESFLLPALISRSFALGLMQIMPFNVGPFAKSLGMDNVDLNDMFNPNIALKFGNYYLNHLK-------KEFNHPLFVAYAYNAGPGFLRRWLESSKRFKGKNHFEP--WLSM-ELMP-------YSETRMYGFRVMLNYLIYQEIFGNFIPIDAFLEQTLNSKDKP |
| 4OXV Chain:A ((253-408)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YTFAQHLQQRLPRYESHFKQSGKQLDTDWRLLA-AIGYQESLWQPGATSKTGVRGLMML----TNRTAQAMGVSN-----RLDPKQSIQGGSKYFVQIRSELPESIKEPDRSWFALAAYNIGGAH----LEDARKMAEKEGLNPNKWLDVKKMLPRLAQKQWYAKTR-YGYARGGETVHFVQNVRRYYDILTWVTQP------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4OXV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -62781 for 1014 contacts (-61.9/contact) +
2D Compatibility (PS) -14197 + (NN) -682 + (LL) 30200
1D Compatibility (HY) -4400 + (ID) 2150
Total energy: -54010.0 ( -53.26 by residue)
QMean score : 0.216
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