Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNFYQKIYTHKVVFSSLFFL---LFL-FNVETLLFSHFSDDFSQ-LFFLFENHVYDFIIKLDYLGLI-GVSSIYLLALILKPFTLTRQKCACIGILCLSFYAWNFPIKNSSIALYVFYFALLGTLLWRFLGASMKQSFLPSMNIC-VVWVFASSLQSFRFLSV----------SDCVDFSLFILALFLLILVLIYHKRLFGLYEYANT------LILIVGLCVVVLCSSMFIQTKEYYGMRLGFYFLGLLGWLL----EYIHNTLRRLEHKI------------ |
| 4RHO Chain:A ((4-259)) | ----DKIHHHH-HHENLYFQGMEIKAMFRDVSLS----SRNFSEML-----SRESKVVAALAAKSPLMAHANWRLKGNSLEEATL--------------YPAFDADGSPSTPALAVLNEEQRGKKHSASHAAIWNGNTRPNEGASMSCHVSDEKVLPDRFSTRLGVPDCYAKSQDLADVVTTIVAAFNPLVVEASPEGYFDKQVFDDKPGVGWMLYLPKVITQQQVPEARALIPVSAKGKQTGTIIVSVTDAPFSVDNPEHVAIANRIEIRLVDQDLLPAYVDI |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RHO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -248615 for 1552 contacts (-160.2/contact) +
2D Compatibility (PS) -22502 + (NN) 2552 + (LL) 2708
1D Compatibility (HY) 10000 + (ID) 2000
Total energy: -257857.0 ( -166.14 by residue)
QMean score : 0.162
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