Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVEVRFFGPIKEE------NFFIK-ANGLKELRAILQ-EKEGLKEW--------LGVCAIALNDHLIDNLDMPLKDGDVISLLPPVCGG
1VJK Chain:A ((3-88))
KVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVS-WDEELKDGDVVGVFPPVS--
General information:
TITO was launched using:
RESULT:
Template:
1VJK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71419 for 508 contacts (-140.6/contact) +
2D Compatibility (PS) -8050 + (NN) -2115 + (LL) -424
1D Compatibility (HY) -6000 + (ID) 1000
Total energy: -89008.0 ( -175.21 by residue)
QMean score : 0.667
(partial model without unconserved sides chains):
PDB file :
Tito_1VJK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VJK-query.scw
PDB file :
Tito_Scwrl_1VJK.pdb
: