Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQNIF-SLLIQK-KSYKKLETLLKLKKLKVFMPLSLQENLLFIFIKDSKLLFAFKDLWASKEFNQRFAKE-ISHFLNTQGH--ACGLDELD-ALEILGYVPKDSLEKANFYAPIKKQA---QFYRPSALGLFHNPIKDARLH-EC-FEKARALIHYQRSFFEE
4Q6V Chain:A ((1-135))
YDWNGAMQPLVSKMLQADGVT-------------------------AGSVLLVDSVNNRTNGSLNANEATETLRNALANNGKFTLVSVQQLSMAKQQLGLSPQDSLGTRSKAIGIARNVGAQYVLYSSASGNVNAP----ALQMQLMLVQTGEIIWSGKGAVQQ
General information:
TITO was launched using:
RESULT:
Template:
4Q6V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27443 for 814 contacts (-33.7/contact) +
2D Compatibility (PS) -12760 + (NN) 14 + (LL) 3232
1D Compatibility (HY) -3200 + (ID) 1300
Total energy: -41457.0 ( -50.93 by residue)
QMean score : 0.206
(partial model without unconserved sides chains):
PDB file :
Tito_4Q6V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Q6V-query.scw
PDB file :
Tito_Scwrl_4Q6V.pdb
: