Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRILQRALTFEDVLMVPRKSSVLPKDVSLKSRLTKNIGLNIPFISAAMDTVTEHKTAIAMARLGGIGIVHKNMDIQTQVKEITKVKKSESGVINDPIFIHAHRTLADAKVITDNYKISGVPVVDDKGLLIGILTNRDVRFETDLSKKVGDVMTKMPLVTAHVGISLDEASDLMHKHKIEKLPIVDKDNVLKGLITIKDIQKRIEYPEANK-DDFGRLRVGAAIGV--GQLDRAEMLVKAGVDALVLDSAHGHSANILHTLEEIKKSLV-VDVIVGNVVTKEATSDLISAGADAVKVGIGPGSICTTRIVAGVGMPQVSAIDNCVEVASKFDIPVIADGGIRYSGDVAKALALGASSVMIGSLLAGTEESPGDFMIYQGRQYKSYRGMGSIGAM---TKGSSD--------RYFQEGVASEKLVPEGIEGRVPYRGKVSDMIFQLVGGVRSSMGYQGAKNILELYQNA-----EFVEITSAGLKESHVHGVDITKEAPNYYG |
4AF0 Chain:B ((60-537)) | -------LTYNDFLVLPGHINFPASDVSLQSKATKNIVLNTPFLSSPMDTVTEDRMAIALALHGGLGIIHHNCSAEEQAAMVRRVKKYEN------------------------------------------------------------------------------------------------------------------YPYASKVPESKQLYCGAAIGTRPGDKDRLKLLAEAGLDVVVLDSSQGNSVYQIEFIKWIKQTYPKIDVIAGNVVTREQAAQLIAAGADGLRIGMGSGSICITQEVMAVGRPQGTAVYAVAEFASRFGIPCIADGGIGNIGHIAKALALGASAVMMGGLLAGTTESPGEYFYHEGKRVKVYRGMGSIEAMEHT------GLDNAATARYFSEADAVK--VAQGVSGDVADKGSINKFVPYLFTGLQHSLQDAGIKSVSELHSCARSGSLRFELRTAS--------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4AF0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -194721 for 3001 contacts (-64.9/contact) +
2D Compatibility (PS) -35899 + (NN) -10483 + (LL) 9796
1D Compatibility (HY) -25200 + (ID) 7900
Total energy: -264407.0 ( -88.11 by residue)
QMean score : 0.491
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