Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | M----FLVKKIGVVIMILVCFLACSQESFIKMQKKAQEQENDGSKRPSYVDSDYEVFSETIFLQ--NMVYQPIEERNAFFQLTKDEDNSFNPENSVILLNEPSDNSEKNLLSYPNDPNNNEDNANNSQKNPFLY-----KPKRKTKNPKLI----EYSQQDFYPLKNGDIIMSKEGDQWLIEIQSK---ALKRFLKDQNDK-DRQIQTFTFNDTKTQIAQIKGKISSYVYTTNNGSLSLRPFYESFLLEKKSDNVYTIENKALDTMEISKCQMVLKKHSTDKLDSQHKAISIDLDFKKERFKSDTELFLECLKES |
4R1D Chain:B ((1-301)) | MDKTGWITHCFGRFLIDLP-PDAVINAGYYLWGDRIEYLDDKPTELAARVDRLEQEWRTQRHKSKGNMFLRKIDFGNESVGLLSWSSEV--ASKTYLLDTYVTSKPTWHVYRWKGKVSVDREQHAVEISRALARNLRSRAPKEIPSEPGFCIDHAYIAGDSFQVERFGVGVTFPEHPGARFEFRSSTGAELNSLLERVDGFVQNMLSTFAGMETLRKGKHPVGSLPGEEYLVAGSDKGQRGY--TFMWEVQGKEESLTEPNLTAGLAVLERSNENGKPPPPAFKSDKEALELWDTIVDSIRVRPTS--------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4R1D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 67822 for 2040 contacts (33.2/contact) +
2D Compatibility (PS) -28665 + (NN) 5257 + (LL) 1264
1D Compatibility (HY) -4800 + (ID) 1750
Total energy: 39128.0 ( 19.18 by residue)
QMean score : 0.056
|
|
|