Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVITGASSGIGLECVLMLLN---QGYKVYALSR---------HATLCVALNHALCECVDIDVSDSNALKEVFLNISAKEDHCDVLINSAGYGVFGSVEDTPIEEVKKQFSVNFFALCEVVQLCLPLLKNKPYSKIFNLSSIAGRVSMLFLGHYSASKHALEAYSDALRLELKPFNVQVCLIEPGPVKSNW-EKTAFENDERKDSVYALEVNAAKSFYS------GVYQKAL-NAKEVAQKIVFLSMSHKIKARYLIGLKTQLLLALYQILPSSWYDSLFRLVVLGRKRDA
3HB4 Chain:X ((6-265))
--LITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVT--EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKVLGSPEEVLDRT---DIHTFHRFYQYLAHSKQVFREAAQNPEEVAEVFLTALRAPKPTLRYFT---TERFLPLLRMRLDDPSGSNYVTAMHREVF--
General information:
TITO was launched using:
RESULT:
Template:
3HB4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -162115 for 1888 contacts (-85.9/contact) +
2D Compatibility (PS) -25350 + (NN) -11242 + (LL) 1076
1D Compatibility (HY) -16800 + (ID) 3900
Total energy: -218331.0 ( -115.64 by residue)
QMean score : 0.491
(partial model without unconserved sides chains):
PDB file :
Tito_3HB4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HB4-query.scw
PDB file :
Tito_Scwrl_3HB4.pdb
: