Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------------MMKAVFINVWYLLLTIILLIIIWRIIKLVLKDKNDSGDKGLG
2H4O Chain:A ((2-63))
ASKKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVKGVE
General information:
TITO was launched using:
RESULT:
Template:
2H4O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11594 for 120 contacts (-96.6/contact) +
2D Compatibility (PS) -4471 + (NN) 32 + (LL) 0
1D Compatibility (HY) 4800 + (ID) 50
Total energy: -11283.0 ( -94.02 by residue)
QMean score : 0.615
(partial model without unconserved sides chains):
PDB file :
Tito_2H4O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2H4O-query.scw
PDB file :
Tito_Scwrl_2H4O.pdb
: