Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNVFEKIIQGEIPCSKILENERFLSFYDINPKAKVHALVIPKQSIQDFNGITPE---LMAQMTSFIFEVVEKLGIKEKGYKLLTNVGKNAGQEVMHLHFHILSGDKH
1KPB Chain:A ((17-118))
-TIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMIVGKKCAADLGLN-KGYRMVVNEGSDGGQSVYHVHLHVLGGRQM
General information:
TITO was launched using:
RESULT:
Template:
1KPB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84557 for 684 contacts (-123.6/contact) +
2D Compatibility (PS) -10832 + (NN) -7495 + (LL) 312
1D Compatibility (HY) -9600 + (ID) 1950
Total energy: -114122.0 ( -166.85 by residue)
QMean score : 0.712
(partial model without unconserved sides chains):
PDB file :
Tito_1KPB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KPB-query.scw
PDB file :
Tito_Scwrl_1KPB.pdb
: