Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPKTETYPRLLADIGGTNARFGLEVAPRQI-ECVEVLRCE-DFESLSDAVRFYLSKCKESLKLHPIYGSFAVATPIMGDFV--Q-MTNNH-WT-FSIET-TRQCLNLKKLLVINDFVAQAYAISAMQENDLAQIGGIKCEINAPKAILGPGTGLGVSTLIQNSD-GSLKVLPGEGGHVSFAPFDDLEILVWQYARSKFNHVSAERFLSGSGLVLIYEALSKRKGLEKVAKLSKAELTPQIISERALNGDYPICRLTLDTFCSMLGTLAADVALTLGARGGVYLCGGIIPRFIDYFKTSPFRARFETKGR-MGAFLASIPVHVVM-KKTPGLDGAGIALENYLLHDRI |
| 2GUP Chain:A ((4-290)) | ------MTIATIDIGGTGIKFASLTPD-GKILDKTSISTPENLEDLLAWLDQRL---SEQ---DYSGIAMSVPGAVNQETGVIDGFSAVPYIHGFSWYEALS-SYQL-PVHLENDANCVGLSELLAHP------------ELENAACVVIGTGIGGAMIINGRLHRGRHGLGGEFGYMTTLAP-----------A--EKLNNWSQLASTGNMVRYVIEKSGH-----------TDWDGRKIYQEAA-AGNILCQEAIERMNRNLAQGLLNIQYLIDPG-VISLGGSISQN-PDFI-Q-GVKKAVEDFVDAYEEYTVAPVIQACTYHADANLYGALVNWLQEEKQW-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GUP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -175522 for 2243 contacts (-78.3/contact) +
2D Compatibility (PS) -28495 + (NN) -2359 + (LL) 3684
1D Compatibility (HY) -1600 + (ID) 2050
Total energy: -206342.0 ( -91.99 by residue)
QMean score : 0.362
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