Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------M-LDKRIKTLLLFFGLNMVCLSVSFTNKPHLCFWFLVLGCYLVYEWQKKQKKDFQSAKSLK-FDSVSELEKDLNMEVTNDEWDTIKKLNEKLKMFFNVENAIYVFLLVSYLIVGMRVTLSLIDNHGVLK
3F1Z Chain:A ((15-133))
QPGDDAVASMQTYSVAQFLQPFTLNPAKASSDYLGK-----WVKVRGV--IVDIRRKSGIAGSYYFIVTMRDEQNKTDKRLTFNFGSHNSADVEALSNG-----------SVATIVGQVHQVQDSTIPTLQNPKVVK
General information:
TITO was launched using:
RESULT:
Template:
3F1Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52079 for 749 contacts (-69.5/contact) +
2D Compatibility (PS) -11079 + (NN) 6557 + (LL) 1732
1D Compatibility (HY) -800 + (ID) 1000
Total energy: -56669.0 ( -75.66 by residue)
QMean score : 0.224
(partial model without unconserved sides chains):
PDB file :
Tito_3F1Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F1Z-query.scw
PDB file :
Tito_Scwrl_3F1Z.pdb
: