Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKVFKRLEKLFSKIQNDKVYGVEHGVEVVKSLASAK-FDETVEVALRLG-VDPRHADQMVRGAVVLLHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEIKNGRI------DFDMVIATPDMMAVVGK-VGRILGPKGLMPNPKTGTVTMDIAKAVTNAKSGQVNFRVDKKGNVHAPIGKASFPEEKIKENMLELVKTINRLKPSSAKGKY-IRNAALSLTMSPSVNLDAQELMDIK
1DWU Chain:A ((9-212))
--------------------------AVKEARSLAKPRNFTQSLDLIINLKELDLSRPENRLKEQVVLPNGRGKEPKIAVIAKGDLAAQAEEMGLTVIRQDELEELGKNKKMAKKIANEHDFFIAQADMMPLVGKTLGPVLGPRGKMPQPVPANA--NLTPLVERLKK-TVLINTRDKPLFHVLVGNEKMSDEELAENIEAILNTVSR---KYEKGLYHVKSAYTKLTMGPPAQIEK-------
General information:
TITO was launched using:
RESULT:
Template:
1DWU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75397 for 1433 contacts (-52.6/contact) +
2D Compatibility (PS) -20685 + (NN) -5727 + (LL) 3408
1D Compatibility (HY) -13200 + (ID) 3050
Total energy: -114651.0 ( -80.01 by residue)
QMean score : 0.510
(partial model without unconserved sides chains):
PDB file :
Tito_1DWU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DWU-query.scw
PDB file :
Tito_Scwrl_1DWU.pdb
: