Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNFYDWIKEFVRDQGEFIAQQSGWLELERSSYAKLIAQTISHVLNGGSLLVSADSSRRWFLNYILSNLNPKDLKERPLLSVIDFNASSFYPKNDANLSLATIELTYQNPMFWHVGRVENEGLKTLLLSKIPSFLWLFEELKEDCLLLKEHDSLLDYKLLQLFKLFENALFSALYNKVAL
2WP0 Chain:B ((1-180))
MKNFYDWIKEFIRDQGEFIAQQSGWLELERSSYAKLIAQTISHVLNGGSLLVSADSSRHWFLNYILSNLNPKDLKERPLLSVIDFNASSFYPKNDANLSLATIEMTYQNPMFWHVGKIENEGLKTILLSKIPSFLWLFEELKEDCLLLKEHDSLLDYKLLQLFKLFENALFSVLYNKVTL
General information:
TITO was launched using:
RESULT:
Template:
2WP0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121653 for 1244 contacts (-97.8/contact) +
2D Compatibility (PS) -19100 + (NN) -8723 + (LL) 0
1D Compatibility (HY) -30400 + (ID) 8600
Total energy: -188476.0 ( -151.51 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_2WP0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2WP0-query.scw
PDB file :
Tito_Scwrl_2WP0.pdb
: