Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKLKSFGVFGNPIKHSKSPLIHNACFLTFQKELGFLGHYHPILLPLESRIK--NEFLHLGLSGANVTLPFKERAFQICDKIKGIALECASVNTLV-LENDELVGYNTDALGFYLSLKHQNY-QNDQNALILGAGGSAKALACGLQKQGLKVSVLNRSARGLDFFQRLGCDC-------FMEPPKSAFDLIINATSASLHNELPLNKEVLKGYFKESKLAYDLAY-GFLTPFLSLAKELKIPFQ-DGKDMLIYQASLSFEKFSDSQIPYSKAFEVMRSVF |
| 1NYT Chain:A ((1-249)) | --METYAVFGNPIAHSKSPFIHQ----QFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVTVPFKEEAFARADELTERAALAGAVNTLMRLEDGRLLGDNTDGVGLLSDLERLSFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISGDIP---AIPSSLIHPGIYCYDMFYQKGKTPFLAWCEQRGSKRNADGLGMLVAQAAHAFLLWHGVLPDVEPVIKQLQEEL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NYT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -129273 for 1944 contacts (-66.5/contact) +
2D Compatibility (PS) -25095 + (NN) -7300 + (LL) 940
1D Compatibility (HY) -16000 + (ID) 4150
Total energy: -180878.0 ( -93.04 by residue)
QMean score : 0.429
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