Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDIKACYQNAQALLEGHFLLSSGFHSNYYLQSAKVLEDPKLAEQLALELAKQIQEAHLNIECVCSPAIGGILAGYELARALGVRFIFTERVDNTMTLRRGFEVKK---------NEKILVCEDIITTGKSAMECAKVLEEKGAQIVAFGALANRGICKRAHSHLKAQEGACLPSHLPLFALEDFVFDMHKPSSCPLCATSVAIKPGSRGN
3MJD Chain:A ((34-204))
----------QVLKFGEFTLKSGRISPYFFNAGLFNTGAQLA-TLADYYAQLIIKSDVKYDILFGPAYKGIPLVAAISTVLALKY----NIDMPYAFDRK-E---GVFVGADMTNKKVLLIDDVMTAGTAFYESYNKLKIINAKIAGVVLSIDRQ-EKAKDSDISATKKISQDFNIPVLAVTNFESIFEYVKENLDETMIDKFKQYRQKY
General information:
TITO was launched using:
RESULT:
Template:
3MJD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77936 for 1156 contacts (-67.4/contact) +
2D Compatibility (PS) -16504 + (NN) -1911 + (LL) 2128
1D Compatibility (HY) -10800 + (ID) 2000
Total energy: -107023.0 ( -92.58 by residue)
QMean score : 0.457
(partial model without unconserved sides chains):
PDB file :
Tito_3MJD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MJD-query.scw
PDB file :
Tito_Scwrl_3MJD.pdb
: