Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKSLCLSFFLTFSNPLQALVIELLEEIKTS-PHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDEKLSLETTLSPNRPTIPRNTQIVFSSKELKEPHSNPIPSLNAPMQKPQNKPSSSQQSPQNFSYPESKL--GSKNSKNSLLQPLVTPSKVSPTNEVKTPTNDANPPLKHSSQDQENNLFVAPPTEKTLPNNTSSADASENNESNENRDNVEKQAIRDPNIKEFACGKWVYDDENLQAYRPSILKRVDKDKEITTDITPCDYSTAENKSGKIITPYTKISVHKTEPLEDPQTFEAKNNFAILQARSST-----EKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAIYERPKQDDQVEPTFYETSELAYSSTRKSEITRNELNLNE-----------KFMEFVEVYEGHYLNDII-----KESSEYKEWVKNHVRFKEGVCMALEIEEQPRAKSTPLSIENSR-VVCVKKGNYLFNEV |
4C0H Chain:A ((19-445)) | ------------GDNEWHKLVIPKGSDWQIDLKAEGKLIVKVNSG-----IVEIFGTELAVDDEYTFQNWKFPIYAVE-------ETELLWKCPDLTTNTITVKPNHTMKY-----IYNLHFMLEKIRMS---------NFEGPRVVIVGGSQTRKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVP-----GCISATPISDILDAQLPTWGQSLTSGATLLHN-------KQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHL---------DPQVRRSGCIVDTPSISQLD--ENLAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFI----------------PKLVDDVYKRSLQRTSIREYFYGSLDTALSPYAIGVD-YEDLTIWKPSNVFDNEVGRVELFPVTITPSNLQHAIIAITFAERRADQATVIKSPIL---GFALITEVNEKRRKLRVLLPVPGRLPSKAMILTSYRYLE- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4C0H.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 95521 for 3148 contacts (30.3/contact) +
2D Compatibility (PS) -41856 + (NN) -831 + (LL) 5020
1D Compatibility (HY) -19200 + (ID) 3650
Total energy: 35004.0 ( 11.12 by residue)
QMean score : 0.084
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