Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFE-EAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCPAGWRKGDKGMKATHQGVAEYLKENSIKL
3QPM Chain:A ((50-236))
--ISKPAPQWEGTAVI-NGEFKE-LKLSDYRGKY-LVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTLRGLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSDTIIPDPSGKLKYFD------
General information:
TITO was launched using:
RESULT:
Template:
3QPM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98768 for 1369 contacts (-72.1/contact) +
2D Compatibility (PS) -19463 + (NN) -1003 + (LL) 412
1D Compatibility (HY) -18000 + (ID) 4150
Total energy: -140972.0 ( -102.97 by residue)
QMean score : 0.512
(partial model without unconserved sides chains):
PDB file :
Tito_3QPM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QPM-query.scw
PDB file :
Tito_Scwrl_3QPM.pdb
: