Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LDYIIAAHGRYAQEVKDSCQMITGQTTNISAITFTEEMGVTDVLDAYMAVYSP---VNETAIIVDIVGGTPCNAAQMFSTKHPEVKVVSGLSLGLIIPLSLGE-S-------LEEAMLGAKDNIQFVEQKASHTIVSDDGEEED
1PDO Chain:A ((3-130))
IAIVIGTHGWAAEQLLKTAEMLLGEQENVGWIDFVPGENAETLIEKYNAQLAKLDTTKGVLFLVDTWGGSPFNAASRIVVDKEHYEVIAGVNIPMLVETLMARDDDPSFDELVALAVETGREGVKALK----------------
General information:
TITO was launched using:
RESULT:
Template:
1PDO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90770 for 849 contacts (-106.9/contact) +
2D Compatibility (PS) -12955 + (NN) -4928 + (LL) 676
1D Compatibility (HY) -8400 + (ID) 1100
Total energy: -117477.0 ( -138.37 by residue)
QMean score : 0.557
(partial model without unconserved sides chains):
PDB file :
Tito_1PDO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PDO-query.scw
PDB file :
Tito_Scwrl_1PDO.pdb
: