Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---------------------------------------------LSNFTAKVPLSERMADVLISKDRWKDDEEGYLKVKYGLEIILINVMKFALVYGIALVTGLLLQTVTVHLSYLWLRRYSFGLHATKTLNCTLISLLMFVLAPFVF----------------QNIPSNNWIVLGTFGFILL-----NMFLFAPADTESLPLIGEEHRKTLKRKAMIGTLILTGIALLIPFAEMKTLIMVG-SLFQVISINPL-TYKLLKRRYRNYEKYE----------------------------------------------------------------------------------------------------------------------------------- |
| 4WGV Chain:A ((5-399)) | VGYMDPGNWITSMQGGAQYGYTLLFVILISSLAAMLLQSMTVRLGIATGKDLAQMTRHFLSKPVAIIFWIIAELAIIATDIA--EVIGSAIALDLIFGIPLIVGALI---TVFDVFLLLFIMRFGFRKIEAIVGTLIFTVLAIFVFEVFISSPQLTDILNGFVPHKEIVTNQGILYIALGIIGATIMPHNLYLHSSIVQSRKY---DRHDNEEKAQAIKYATIDSNLQLSIAFVVNCLLLTLGAALFFGTKTNDLGGFYDLYHALKTEPVLGATLGGVMSTLFAVALLASGQNSTITGTLAGQIVMEGFLRLSIPNWLRRLITRSLAVIPVIICLIIFKGNSEKIEQLLVFSQVFLSIALPFSLIPLQLATSNKKLMGPFINKTWVNIISWTLIVILSGLNVY |
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General information:
TITO was launched using:
| RESULT:
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Template: 4WGV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -61607 for 1045 contacts (-59.0/contact) +
2D Compatibility (PS) -20474 + (NN) -10627 + (LL) 852
1D Compatibility (HY) -12800 + (ID) 2000
Total energy: -106656.0 ( -102.06 by residue)
QMean score : 0.079
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