Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLPVFICEDNRMQRERLTKYIE-DYIMVEHFDMKLELSTGDPFELVSRMPTHQGMGLYFLDIDLGQPDMNGFELAQEIRKFDPRGFIIFITTHAELSYMTFTYKVEALDYIIKDDIDLLHDRVLACMKQAEERISNDQDMQKYFTFKVSDKKIIHELLDDILFFETAPTIHKVILHGKNRQVEFYGKLKNIEKMLDESFYRCHRSYIVNKKNIHELDTTKGVVKMSNGENCYASSKLIKSLSL
1QKK Chain:A ((7-122))
---VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFA---------GIVISDIRM--PGMDGLALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAK---PFAADRLVQSARRAEEK--------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1QKK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102629 for 920 contacts (-111.6/contact) +
2D Compatibility (PS) -12799 + (NN) -8668 + (LL) 8520
1D Compatibility (HY) -6000 + (ID) 1600
Total energy: -123176.0 ( -133.89 by residue)
QMean score : 0.522
(partial model without unconserved sides chains):
PDB file :
Tito_1QKK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QKK-query.scw
PDB file :
Tito_Scwrl_1QKK.pdb
: