Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLKQLTNQLFTSTIFLVTMLFIIPPTFAIADGSKVSFYEYIYGAPLRWLTVISTTEKKGAFLEMFFSENEGINIQWLNLIINFLLVFLVITIIFSLAKKFYNKKNA-
1BG8 Chain:A ((10-85))
KKPVNSWTCEDFLAV------------------------DESFQPTAVGFAEALNNKDKP---------EDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKI
General information:
TITO was launched using:
RESULT:
Template:
1BG8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29394 for 500 contacts (-58.8/contact) +
2D Compatibility (PS) -7562 + (NN) -1760 + (LL) 2988
1D Compatibility (HY) 1200 + (ID) 400
Total energy: -34928.0 ( -69.86 by residue)
QMean score : 0.330
(partial model without unconserved sides chains):
PDB file :
Tito_1BG8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BG8-query.scw
PDB file :
Tito_Scwrl_1BG8.pdb
: