Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------MDYVIIQSMDKEVEEILTDID----------------YGSFSYDYEKNTSRAIS----FTVNKTKQNAAIF--DLVGNEAILTYQGQQFVIKKCTP-KSIGGT--LSKQITAQHICYTVQDHVQYNVKSGRKKYSIQTVLEFALQDNVLGFSYEIQGSFPLVELEDLGNKNGLELVNLCLEEFGAILFADNKKLYFYDEKSWY-VKTEKQFRYLYNTEEVSVDTNTDNLKTEIK----CYGKQKENADKLTGDNKYMAVVTYTSPNEAIYGKRMANAKSDDKITNNDDLLIFAKKQILDVPETALTISYKGKEPVSERDVWYFIHEPMGFETEVKVTKIKSSHPWSKKFQEIGFSNSRRDMVRIQTQIANQVKK-ASVDTNKINSFSSI----AMNAYDSRILTEVVGVVDGD---------------- |
| 4R2F Chain:A ((38-431)) | GAIKFWDMPWAT-PAYNDAAKKIAEGFSGANSKATYQIIQWNNFYQTFSSAIASKTGPAVSTGGGFQAFQFEEQGQIAYADKVIEKLKSNGQFDDFLPGVVEPFKTSKGYVAVPWQLDIRPLWYRKSLFEKAGVGVPTDWASLLEAGKKLKGVGAVGFAT---GSGA-------GNNIGNHLMIMMMLNNGGGVFTKDGELDVLNDRNVEAVEFLLELVSNGVIDPAAVSYTTDNLNAQWKDSKAAYGMLTLGVPERVGDTSGDIVVA--SPIAGPHGDKA----------------------ALIFPNNIMMYTNTPSQEASEEFVVYYLGKL----KELWQQKLMNALPVFKSITEMPEFTADPNNVKIVNEYVPIAKTFASQGTALSANLAALDGGQALNQFTQTVLT---GKTDAKSALTAFDTGLKSVLKK |
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General information:
TITO was launched using:
| RESULT:
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Template: 4R2F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 19136 for 2711 contacts (7.1/contact) +
2D Compatibility (PS) -35116 + (NN) -3445 + (LL) 3568
1D Compatibility (HY) -6000 + (ID) 3550
Total energy: -25407.0 ( -9.37 by residue)
QMean score : 0.162
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