Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDEETLLERGYRKYRGADVDIYFNTNVCEHSGNCVKGNVE-LFNLDRKPW-IM----PDNVSKEEAKRVIHTCPSGALQYIEK
2VPZ Chain:B ((82-144))
-------------------LVLVDPKKCIACGACIAACPYDARYLHPAGYVSKCTFCAHRLEKGKVPACVETCPTYCRTFGD-
General information:
TITO was launched using:
RESULT:
Template:
2VPZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14547 for 243 contacts (-59.9/contact) +
2D Compatibility (PS) -5543 + (NN) 600 + (LL) 1376
1D Compatibility (HY) -2000 + (ID) 400
Total energy: -20514.0 ( -84.42 by residue)
QMean score : 0.302
(partial model without unconserved sides chains):
PDB file :
Tito_2VPZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VPZ-query.scw
PDB file :
Tito_Scwrl_2VPZ.pdb
: